PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g05060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 382aa    MW: 42151.3 Da    PI: 4.974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g05060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11203248454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  Vang11g05060.1 203 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKDL 248
                     699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16203266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16204266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-12204253No hitNo description
SMARTSM003531.5E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEESNKPMD DASAPSWLSD LDMDDYNLFP DECALNLNLF DDQEFLPQYI ASALEEQTQS  60
LQRSLSSECP SKTVSNSSTD ETSFDFERPA KLLKTTSSSC CNSDSSTITN NLSPKLSPST  120
SFSSFQSHIL SFDNPNSSPP TTTTTTHFYG FDLNPTQNEM VSVSMPQLTK SRFPDQTPKG  180
SSKNHNFETK PSHGKRSPAH AQDHIMAERK RREKLSQSFI ALAALVPGLK KMDKASVLGD  240
AIKYVKDLKE RLAVLEEQSK KTREESAVVL NKPELSGDDD SSSCDESIGA DSVSDTLFEV  300
ESRVSGKEML LRIHCLKQKG LLVKLLAEIQ RNNLLVINSS ILPFGDSILD ITIVAQMGEN  360
YNLTMKELAK NLRVSANKVV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13203277880Transcription factor MYC2
5gnj_B5e-13203277880Transcription factor MYC2
5gnj_E5e-13203277880Transcription factor MYC2
5gnj_F5e-13203277880Transcription factor MYC2
5gnj_G5e-13203277880Transcription factor MYC2
5gnj_I5e-13203277880Transcription factor MYC2
5gnj_M5e-13203277880Transcription factor MYC2
5gnj_N5e-13203277880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRE
2208213RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g05060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424163.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0S3R5B20.0A0A0S3R5B2_PHAAN; Uncharacterized protein
STRINGXP_007155779.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-49bHLH family protein