PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g04900.2 | ||||||||
Common Name | LR48_Vigan01g200200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 634aa MW: 70757 Da PI: 6.2655 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.8e-12 | 315 | 371 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Vang11g04900.2 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 371 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 28.8 | 3e-09 | 403 | 442 | 13 | 55 |
AP2 13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 rW A+I + +k +lg+f t eeAa+a++ a+ k++g Vang11g04900.2 403 RRWQARIGRVA---GNKDLYLGTFSTQEEAAEAYDIAAIKFRG 442 35666655531...36************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-14 | 315 | 381 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.77E-19 | 315 | 379 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 315 | 371 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.451 | 316 | 379 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 316 | 380 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-22 | 316 | 385 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 317 | 328 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.554 | 389 | 450 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-13 | 402 | 451 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-13 | 402 | 450 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.37E-19 | 404 | 452 | No hit | No description |
SMART | SM00380 | 2.1E-20 | 404 | 456 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 432 | 452 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MKSMENDDSV DLNNQNNWLG FSLSPQMNVG VASHPQPSSA ADVVPTSFYH TAPLNNYGFY 60 YGLEAENVGL YSALPIMPLK SDGSLYGMEA LSRSQTQAMA TTSTPKLENF FGGEAMGTPH 120 YECSVTETIP LSLDSVFYNQ SSRRDPNNQT FQNHVQHITT QQQHQQDLQA QHLSYYSTLR 180 NHDMMLEGSK QSQTSDSNLQ LPNMGDDGVP APGLKSWGVR NFQTSHAQDS KLIVPVEENG 240 GESGSIGSMA YGDLQSLSLS MSPSSQSSCV TSSHRTSPAV IDSVAMDTKK RGPEKVDQKQ 300 IIHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDMEEKAAR 360 AYDLAALKYW GPSTHINFPL ENYQNELEEM KNMTRQEYVA HLRRWQARIG RVAGNKDLYL 420 GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD ITRYDVEKIM ASSNLLSSEL ARRNRETDSG 480 TQYIDHNHKS SAYDDTQEAI LMQKSCESQN EQWKMAPYQS SQQLDQNPPR TESDRTNQSF 540 SVALDNMFHQ EVEESRKVRT HVSNPSSLAT SLNSSREGSP DRTSLPMLSG MPSTASKLLS 600 TNPNNVNSWD PSPHLRPALS LPQMPVFAAW TDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g04900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027920762.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-134 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A4D6KU15 | 0.0 | A0A4D6KU15_VIGUN; AP2-like factor | ||||
STRING | XP_007155799.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-104 | AP2 family protein |