PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g04900.1
Common NameLR48_Vigan01g200200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 647aa    MW: 72365 Da    PI: 6.5888
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g04900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.72.9e-08315384155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng........kr.....krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g        k+      +f    ++ +e+Aa+a++ a++k++g
  Vang11g04900.1 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsrkgrqgKKgvifpHHFIFRGYDMEEKAARAYDLAALKYWG 384
                     78*******************988884446668888334668999***********************98 PP
2AP228.83.1e-094164551355
             AP2  13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      rW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vang11g04900.1 416 RRWQARIGRVA---GNKDLYLGTFSTQEEAAEAYDIAAIKFRG 455
                     35666655531...36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.61E-16315392No hitNo description
PfamPF008474.8E-5315384IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-10315394IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-9316393IPR001471AP2/ERF domain
PROSITE profilePS5103216.397316463IPR001471AP2/ERF domain
SMARTSM003801.1E-17316398IPR001471AP2/ERF domain
PRINTSPR003674.9E-6317328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-13415463IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-13415464IPR016177DNA-binding domain
SMARTSM003802.1E-20417469IPR001471AP2/ERF domain
CDDcd000184.57E-19417465No hitNo description
PRINTSPR003674.9E-6445465IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MKSMENDDSV DLNNQNNWLG FSLSPQMNVG VASHPQPSSA ADVVPTSFYH TAPLNNYGFY  60
YGLEAENVGL YSALPIMPLK SDGSLYGMEA LSRSQTQAMA TTSTPKLENF FGGEAMGTPH  120
YECSVTETIP LSLDSVFYNQ SSRRDPNNQT FQNHVQHITT QQQHQQDLQA QHLSYYSTLR  180
NHDMMLEGSK QSQTSDSNLQ LPNMGDDGVP APGLKSWGVR NFQTSHAQDS KLIVPVEENG  240
GESGSIGSMA YGDLQSLSLS MSPSSQSSCV TSSHRTSPAV IDSVAMDTKK RGPEKVDQKQ  300
IIHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG KKGVIFPHHF  360
IFRGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQNEL EEMKNMTRQE YVAHLRRWQA  420
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVNAVT NFDITRYDVE KIMASSNLLS  480
SELARRNRET DSGTQYIDHN HKSSAYDDTQ EAILMQKSCE SQNEQWKMAP YQSSQQLDQN  540
PPRTESDRTN QSFSVALDNM FHQEVEESRK VRTHVSNPSS LATSLNSSRE GSPDRTSLPM  600
LSGMPSTASK LLSTNPNNVN SWDPSPHLRP ALSLPQMPVF AAWTDA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g04900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920761.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ389141e-132ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A4D6KU150.0A0A4D6KU15_VIGUN; AP2-like factor
STRINGXP_007155799.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-93AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  8. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  9. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  10. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  11. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  12. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]