PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g04850.1 | ||||||||
Common Name | LR48_Vigan01g199600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 172aa MW: 19917.6 Da PI: 10.1171 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.3e-10 | 66 | 125 | 5 | 64 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 ++ rr+++NRe+ArrsR RK+ +e+L++ + eN++L ++l+ ++ +l++e+e Vang11g04850.1 66 RKLRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELNNRLQFVLHHCNRLRTENE 125 6789************************************************99999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-11 | 62 | 126 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.036 | 64 | 127 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.6E-9 | 64 | 121 | No hit | No description |
Pfam | PF00170 | 1.2E-7 | 66 | 125 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.41E-10 | 66 | 118 | No hit | No description |
CDD | cd14702 | 1.03E-17 | 67 | 118 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 69 | 84 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MLTTLPPSEP FVGNPFSAFS VDFTAWEDDS HHLLSPKPVT SSSGSDKPEP EPAEPDQPVV 60 SVVDERKLRR MISNRESARR SRMRKQRHLE NLRNQLNKCR VENRELNNRL QFVLHHCNRL 120 RTENEWLRSQ RTLLLQKVAN LTQILIFQQF QQPISPAWTC NTSLIPINQV N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 85 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g04850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432833.1 | 1e-122 | PREDICTED: bZIP transcription factor 2-like | ||||
TrEMBL | A0A0L9TPH8 | 1e-121 | A0A0L9TPH8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4W8 | 1e-121 | A0A0S3R4W8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155805.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5435 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 4e-26 | basic leucine-zipper 5 |
Publications ? help Back to Top | |||
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