PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g04540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 26977.9 Da PI: 8.91 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.1 | 8.8e-31 | 17 | 118 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ ++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ Vang11g04540.1 17 SCNGCRVLRKGCSESCVLRPCLqwietSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 111 6*********************9998777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ Vang11g04540.1 112 AVETVLR 118 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.901 | 16 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-26 | 17 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRGNTEPRTP KTKIGMSCNG CRVLRKGCSE SCVLRPCLQW IETSEAQGHA TVFVAKFFGR 60 ADLMSFISNV PENQRPALFQ SLLFEACGRT VNPVNGAVGL LWTGNWHVCQ AAVETVLRGG 120 TLRPMPELMG LASPAADETS EVACSDIWRI RDPNPTCGFT NTRSHTRVSS ASKRKRLEEP 180 AKLQAAPNLD LRLTPIFLQK KVENRRPVSP SMTSEESGTT TACLESKFGD QWGHSGDRKV 240 LNLFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g04540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421901.1 | 1e-170 | PREDICTED: LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 2e-85 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A0L9TQG1 | 1e-169 | A0A0L9TQG1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155842.1 | 1e-162 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-88 | LOB domain-containing protein 38 |