PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g03860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23139.1 Da PI: 10.3751 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.6e-17 | 91 | 141 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++ +g+W+AeIrdp + +r++lg+f+ta+ A +a+++a+++++g+ Vang11g03860.1 91 RYRGVRQRL-WGKWAAEIRDP-----HkaARVWLGTFDTAKAATRAYDEAALRFRGN 141 7*****999.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.9E-12 | 91 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.947 | 91 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-31 | 91 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-33 | 91 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-21 | 91 | 150 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-13 | 92 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.72E-24 | 100 | 150 | No hit | No description |
PRINTS | PR00367 | 5.3E-13 | 130 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRCRVVYAEM MVANLLELGS LGQNQLGSSS PFGCKGYCSS VPTHWCHSLL GSGSVGQKRA 60 REDDSAAAVS GGEGGSSRSA SQEESGERRR RYRGVRQRLW GKWAAEIRDP HKAARVWLGT 120 FDTAKAATRA YDEAALRFRG NRAKLNFPEN INAVRPLHLP DFSATSLSGS GDVPAVTGYS 180 PMVMQGTPLQ RLLGLFSAST EHRGVPWTRS LVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 90 | 153 | 4 | 68 | ATERF1 |
3gcc_A | 2e-21 | 90 | 153 | 4 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 91 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g03860.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512914.1 | 5e-65 | ethylene-responsive transcription factor ABR1 isoform X1 | ||||
Refseq | XP_022641246.1 | 1e-65 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
Refseq | XP_022641247.1 | 1e-65 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
Refseq | XP_022641248.1 | 1e-65 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
Refseq | XP_022641249.1 | 1e-65 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
TrEMBL | A0A1S3V445 | 1e-63 | A0A1S3V445_VIGRR; ethylene-responsive transcription factor ABR1 isoform X1 | ||||
TrEMBL | A0A3Q0FBS8 | 3e-64 | A0A3Q0FBS8_VIGRR; ethylene-responsive transcription factor ERF110 isoform X2 | ||||
STRING | XP_007143561.1 | 1e-46 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 3e-29 | ERF family protein |