PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03820.1
Common NameLR48_Vigan1345s001200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 275aa    MW: 30301.8 Da    PI: 5.5312
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y +++d++++++iswse+gn+fvv+++ +fa ++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+kell++
  Vang11g03820.1  10 FLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAMDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANECFKRGQKELLTE 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k+
  Vang11g03820.1  96 IKRRKT 101
                     ****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.93E-35699IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3707.9E-4142175IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSQRSTPAPF LTKTYLLVDD PATDDVISWS ETGNTFVVWK HADFAMDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANECFKRGQK ELLTEIKRRK TVMQSPATGK SGGGNISASH  120
SGGDDMGSTS TGSVEGATTT QCADLTGENE KLKKDNEKLS GELARAKKQC NELVSFLRES  180
LNVCPDVINR ITRQGTCGSS DDAVRFECSG DDDDENAVGE YEGKVDDESG GESLKLFGVW  240
LKGENGNEKE KVKIGSNCRK RGRDDPIKEL KTLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-30510125131Heat shock factor protein 1
5d5v_B5e-30510125131Heat shock factor protein 1
5d5v_D5e-30510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411472.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223359e-96HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0L9TIM30.0A0A0L9TIM3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4Y40.0A0A0S3R4Y4_PHAAN; Uncharacterized protein
STRINGXP_007155926.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-68heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]