PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g03810.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 454aa MW: 51621.9 Da PI: 6.5837 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 89 | 173 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l++s+v + ++ lp +f+++h + +++t++ledesg++++ k+i +k++ l++GW++F ++L+egD vvF+l++ ++f+ Vang11g03810.2 89 FVKSLVRSHVASCFWMGLPVSFCKRHLPD--KDTTIILEDESGKEYNTKFIACKTG----LSAGWRQFSAVHKLQEGDAVVFQLVEPTKFK 173 89************************534..5679***************777776....***********************99876664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 81 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-21 | 84 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-23 | 87 | 173 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 89 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 89 | 174 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-21 | 89 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
LKMVVTDERN RDRANRRDVV ELTQYDQAVT VAYYGEELHG GATCAEAQKF SSSMKAAVEG 60 TSSRGEVMSS AVLQAEEVQS NLRPEFPSFV KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT 120 TIILEDESGK EYNTKFIACK TGLSAGWRQF SAVHKLQEGD AVVFQLVEPT KFKARLVSLC 180 FYFLLLYQIM NDCGFMHSLF CSLLSGKDNM DTDLTCNSSK RKHGKSVPLD IQKKKKANLS 240 RLRPKVMPSV EQPEDGSEEA LSEVMEEFRM LEFEDVRGFE NFSIIVDGVS IDAEFPDDVR 300 NKYYRLCCSQ HAFLHENLIK GMNYKLVAGI ISETVNIADA IKVSMLCTPR FEFVNWDKTL 360 LAFEHLGMNV EFLRIRLRRL VSIAYEENDV SEVKKYLASR NEYSRADDEI RNIEEKLEEL 420 KGACNGFGAY IGSLKGKAEN YHNKFRREVH APW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 235 | KRKHGKSVPLDIQKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g03810.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409560.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A0S3R4Y9 | 0.0 | A0A0S3R4Y9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155931.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 9e-31 | B3 family protein |