PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang11g03640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 502aa MW: 56009.3 Da PI: 6.563 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.8 | 1.6e-42 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp ++p++f++vh++FGasnv+kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l+q + el+ Vang11g03640.1 52 PCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGIISLLQQRLRQIQMELQ 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e Vang11g03640.1 147 SAKKE 151 99987 PP | |||||||
2 | DUF260 | 105.2 | 5.5e-33 | 330 | 429 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk++rr+C +dCv+ yfpae+ ++fa+vh++FG nv+++l++++++ r+ ++++l+y+Aear+rdPv+G+vg+i++ ++ l lk++l+ Vang11g03640.1 330 PCGACKYQRRRCGSDCVMVSYFPAESIQRFAYVHHVFGGGNVSNILRSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKLE 424 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e Vang11g03640.1 425 KAKRE 429 99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.521 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-42 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 22.432 | 329 | 430 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-32 | 330 | 427 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 502 aa Download sequence Send to blast |
MRNDIASSKK DCLWQNYCPY YHYETNDHNH ELTWFIQLTE GRLGKMSSLN SPCAACKLLR 60 RKCTQECVFA PYFPPDNPQR FECVHRVFGA SNVSKLLNEL SVAQRDDAVK SLAYEAEARL 120 RDPVYGCVGI ISLLQQRLRQ IQMELQSAKK ELSTYVSPQT MQILLANPGM VPSADIVVPP 180 SHQPLFNHVG NNMAPQQILV GHGGGQTMDR DPQQQDFQEA QQIALATREQ QQQMFRNYEQ 240 KVFGGFEPSN GGFGTQGELL SPLALGNFGN VGAYQMQQLG EQHLIESQLL LSPQQGQPHQ 300 QQQCESEDTK NVLDFSVNSA VVEEEQGMTP CGACKYQRRR CGSDCVMVSY FPAESIQRFA 360 YVHHVFGGGN VSNILRSTSP DLRKWVARAL AYQAEARVRD PVHGCVGLIW EQEETLGILK 420 EKLEKAKREL AQYVGPDVMQ KMIGQCSSDP HAKTVDLKAP LSAPVDFDLS SWDPFPAWES 480 SSSRRLPSQA DAKGKTIAPP S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-44 | 50 | 433 | 9 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-44 | 50 | 433 | 9 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang11g03640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410308.1 | 1e-180 | PREDICTED: LOB domain-containing protein 36 | ||||
Refseq | XP_017410309.1 | 1e-180 | PREDICTED: LOB domain-containing protein 36 | ||||
Refseq | XP_017410311.1 | 1e-180 | PREDICTED: LOB domain-containing protein 36 | ||||
Swissprot | Q9FKZ3 | 2e-56 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A0L9TGF2 | 1e-178 | A0A0L9TGF2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4R9 | 1e-178 | A0A0S3R4R9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155957.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40805 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-50 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|