PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g03540.1 | ||||||||
Common Name | LR48_Vigan727s002200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 363aa MW: 40580.8 Da PI: 7.2795 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103 | 1.8e-32 | 227 | 282 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v gLt+++vkSHLQkYRl+ Vang11g03540.1 227 KQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLH 282 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.499 | 224 | 284 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-29 | 225 | 285 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.12E-18 | 225 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-26 | 227 | 282 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 229 | 280 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MELSLDLSLA FVPGRTVRQI LGEVAQNEGG SQRMATLEDF LLKLEDEKRK IESFKRELPL 60 CMVLVNDAVT KLKEEINGGV RMQEGPVVEE YMPLLKTNSE GSETLNMGKE RSNMKNWMNS 120 VRLWNVESKP RTEEDDRCVP HNPNQPQNET NKSRGAAAAL NGNNCVLKTV MSEDKRVSQA 180 PSHGLMRPVF ESNDRKAESS NEHGSSLITT STLEIKGQAQ PQQNPRKQRR CWSPELHRRF 240 VDALQQLGGP QVATPKQIRE LMQVVGLTND EVKSHLQKYR LHFRRPQVCS VEVANGGLCL 300 MVKDKHGDNN KSKGNLSQSG SPQGPLFLGG SGRNSMDTEE DEQSDCHNWK GALHHQPEAE 360 LL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g03540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410297.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X1 | ||||
TrEMBL | A0A0L9TG55 | 0.0 | A0A0L9TG55_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4E7 | 0.0 | A0A0S3R4E7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155959.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 5e-48 | G2-like family protein |
Publications ? help Back to Top | |||
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