PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23858.2 Da    PI: 7.5675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1848101356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq+  Le+ F +++++  e++ +LA +lg++ rqV vWFqNrR ++k
  Vang11g03040.1  48 KKRKLTAEQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWK 101
                     45699************************************************9 PP
2HD-ZIP_I/II109.52.3e-3548138292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkr+l++eqv+lLE++F +e+kLe+erK +la eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++ + ++++Le+ v +L+e+l 
  Vang11g03040.1  48 KKRKLTAEQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLL 138
                     9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.37443103IPR001356Homeobox domain
SMARTSM003892.4E-1646107IPR001356Homeobox domain
PfamPF000461.4E-1548101IPR001356Homeobox domain
SuperFamilySSF466892.52E-1848111IPR009057Homeodomain-like
CDDcd000861.45E-1248104No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1950110IPR009057Homeodomain-like
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNNRLESQMM LFSHQYPGAF TEVTPPQQGK EAKPRRKRNK NGAAATPKKR KLTAEQVSLL  60
EKNFCSEQKL ESERKDQLAF ELGMDPRQVA VWFQNRRFRW KTKKLEEEYS NLKNVHETTM  120
LQKCHLETRV LKLEEQLLEA KKEIQQLQER DERAASKDLL EAVNPPFPEE FRVEEYDYGD  180
VFYIPETHYI NGMEWINLYM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13550RKRNKNGAAATPKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-171AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435056.11e-144PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232082e-58ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0S3R4S21e-147A0A0S3R4S2_PHAAN; Uncharacterized protein
STRINGXP_007156020.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-50homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]