PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02990.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 333aa    MW: 36546.4 Da    PI: 9.2117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.43.1e-80333136374
            GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq 130
                     +p++R+a++f+ AL++ l++s    +     + +s  + +++++ +k+fs +sPi+ fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++
  Vang11g02990.1   3 KPLHRAAFHFKDALHSILSGSNRAAS----NRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMK 93 
                     799****************9444444....4444444589******************************************************* PP

            GRAS 131 aLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                     ++a++++g+   lRiT+v+++e   + e + ++e+L++fA+ lg++++ +++  +++e++++++ r+  gE++aV l+ +++  l + ++     
  Vang11g02990.1  94 EIAEKAAGASlLLRITAVVPEE--YAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFEAVSFKAVRFVDGEKIAVLLSPAIFCRLGSVGA---SV 183
                     ******777669********66..99999**********************9999***************************99954444...45 PP

            GRAS 225 devLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlek 314
                      ++L  v+++ P vvv+v+ e  ++   ++sF ++++++le+ys+++dsl+a++++    e+ + +E  ll+++i  +v  + ++          
  Vang11g02990.1 184 GAFLADVRRMAPGVVVFVDGEgwTEAtAAASFRRGVVNSLEFYSMMLDSLDASVAAGGggEWVRRIEMLLLRPKIFAAVESARRR-------SPA 271
                     5********************553334677***********************9998888999*************999876665.......789 PP

            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Wre++  aG++pv+ls++a  qa++ll+kv+ +g++ve+++++lvl+W++r++vs+SaWr
  Vang11g02990.1 272 WREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVSTSAWR 331
                     ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.4381311IPR005202Transcription factor GRAS
PfamPF035141.1E-773331IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAKPLHRAAF HFKDALHSIL SGSNRAASNR LSSMAEIVQT IKTFKAFSGI SPIPMFSIFT  60
TNQALLETLN GSSFVHVIDF EIGLGIQYAS LMKEIAEKAA GASLLLRITA VVPEEYAVES  120
RLVRENLNQF AHDLGIRVQV DFVPLRTFEA VSFKAVRFVD GEKIAVLLSP AIFCRLGSVG  180
ASVGAFLADV RRMAPGVVVF VDGEGWTEAT AAASFRRGVV NSLEFYSMML DSLDASVAAG  240
GGGEWVRRIE MLLLRPKIFA AVESARRRSP AWREAFYGAG MRPVQLSQFA DYQAECLLAK  300
VQIRGFHVEK RHAELVLCWH ERAMVSTSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-22333138375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505917.10.0scarecrow-like protein 15
SwissprotO232101e-129SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0S3R4A20.0A0A0S3R4A2_PHAAN; Uncharacterized protein
STRINGXP_007156025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-131GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]