PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02970.1
Common NameLR48_Vigan01g186600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 430aa    MW: 44382.5 Da    PI: 8.4292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-051234123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Vang11g02970.1 12 FVCEICSKGFQRDQNLQLHRRGH 34
                    89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-51134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-61134No hitNo description
SMARTSM003550.0361234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8871234IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM003552305383IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-476108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-683107No hitNo description
SMARTSM003552288114IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
LSPKTLLATN RFVCEICSKG FQRDQNLQLH RRGHNLPWKL RQRSTKEVRK RVYVCPEPAC  60
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKDG ARSHTVVTKA  120
NEENDSMVLT DSPLPEVAAA AATTPAQSNS VISSGVQTQN PELPESNPPQ VIEEPQATTA  180
ISGSSGSNNN SSTNCSASNV GATNNSNSSS VFASLFASST SSGTLQSQTP AFGNLIRSMG  240
PPDHRADITA PSSAEAISLC LSTSNASPIF ATGGQEHTNA SPPQPAMSAT ALLQKAAQMG  300
AAATNASLLR GLGILSSSSA STPSGQQNGL QWGQPQLESE SVSVPAGLGL SLPCDGDSGL  360
KELMTGTPSM FGPKHTTLDF LGLGMAAGGG LSALITSIGG GLDVAAAAAA GTFGGNGEFS  420
GKDIARRSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027916218.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-118IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A4D6KZ440.0A0A4D6KZ44_VIGUN; Regulatory protein SWI5
STRINGXP_007156028.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-63C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]