PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g02440.1 | ||||||||
Common Name | LR48_Vigan01g180500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 294aa MW: 32486.3 Da PI: 7.6068 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 211 | 245 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l Vang11g02440.1 211 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 245 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.6E-84 | 5 | 285 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 1.43E-14 | 204 | 267 | No hit | No description |
SMART | SM00401 | 2.1E-16 | 205 | 259 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.939 | 205 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 209 | 243 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.07E-14 | 210 | 258 | No hit | No description |
Pfam | PF00320 | 1.5E-16 | 211 | 245 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 211 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MECLEAVLKS SFRKDMALKL SPQAFPEDLN MQNVTSSDDL FVDDLLDFSL LENEEPDQHK 60 HSHHSTSVSP RNDNHHMYNC NHSFNDNFNT ELTLPAEEVA DLEWVSHFIE DSFSKYSLSF 120 PATVTQSLAE KPPEPGNAGF TFKTLVPAKP RSKRTRTGVR VWPLRSPSSF TDTSSPDSPL 180 VICAATSKDH HPEDKRAKKR AASDGGAARR CSHCGVQKTP QWRTGPLGAK TLCNACGVRY 240 KSGRLLPEYR PACSPTFSSE LHSNHHRKVL EMRQKKEAGP GPDTGSPASV PGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g02440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426428.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 2e-66 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A0L9TQ00 | 0.0 | A0A0L9TQ00_PHAAN; GATA transcription factor | ||||
TrEMBL | A0A0S3R417 | 0.0 | A0A0S3R417_PHAAN; GATA transcription factor | ||||
STRING | XP_007156103.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 9e-66 | GATA transcription factor 5 |
Publications ? help Back to Top | |||
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