PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02160.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 651aa    MW: 72628.8 Da    PI: 5.6759
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.88.7e-252886260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Fl+k+y++++d+++++++sws  +nsf+v+++ efa+++Lpk+Fkh+nf+SFvRQLn+Y
  Vang11g02160.1 28 FLSKTYDMVDDPSTDSIVSWSPMNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTY 86
                    9********************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-4424261IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-342594IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-232687IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.7E-212886IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-152851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-156678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-157991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-34229261IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEGAGSGGGE VSTAGPTPIP NANAPPPFLS KTYDMVDDPS TDSIVSWSPM NNSFIVWNPP  60
EFARDLLPKH FKHNNFSSFV RQLNTYVSKP LLTFVFYTWT IVYRQLSIGL TVSEWEMEEP  120
QASDNHGITV VSQSLLMIHE LHLGPLCFDS ASCSSFHLLL LGNHSCHYVV HALLMNLVPK  180
KNLSQAMEEP FSCRRFRLLV HAKCCVYQIK SFTFGLLVTL RFSQQFIIKQ GFRKVDPDRW  240
EFANEGFLRG QKHLLKTISR RKPAHGHNHQ QAQQVHGQNS SVGACVEVGK FGLEEEVEIL  300
KRDKNVLMQE LVRLRQQQQS TDNQLQTMVQ RLQGMEQRQQ QMMSFLAKAV QSPGFLSQFV  360
QQQNDSNRRL TEANKKRRLK QEGIGEMEHT AASDGQIVKY QPLINEAAKA MVRQIMKLDA  420
SRQESFSNNP DNYLIGDHSS PSSEMDRGNS LSRSSGVTLQ EVPPTKVQSS YVPSAARTQG  480
HGPSTGKSEI LSSSQVAACG EVTYPNLNVS VGEPNAPAIP VTQTDEIMPD LATIPDIVAG  540
NILNIPQENY MAPETGGDGY MDPTSFGVNM SLPLDFDSIS TEPDIDDLLN NPHFWDDIVR  600
TPVSEDIETN GTEVFYENEL QPTENGWEKS QHMDLLTEQM GLLSSDAKKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1820861887Heat shock factor protein 1
5d5v_B2e-1820861887Heat shock factor protein 1
5d5v_D2e-1820861887Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373380NKKRRLKQ
2374379KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411531.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401521e-123HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0L9TNF70.0A0A0L9TNF7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R3W10.0A0A0S3R3W1_PHAAN; Uncharacterized protein
STRINGGLYMA16G13400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-94heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]