PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g02130.3 | ||||||||
Common Name | LR48_Vigan01g153600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 136aa MW: 14603.8 Da PI: 4.8841 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 20.6 | 9.7e-07 | 1 | 16 | 36 | 51 |
G2-like 36 mkvkgLtlehvkSHLQ 51 m+vk+Ltl+hvkSHLQ Vang11g02130.3 1 MDVKDLTLAHVKSHLQ 16 9*************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 1 | 16 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDVKDLTLAH VKSHLQVISN LRQSDTYDNG SSGDTSEDLV FDRNSPRRSD LSIRQARTSV 60 NQDIGNGGLW NNSSRQAFLH GKPNLDSIGN VPSAEGMDPK GQSNEISDGN SSSDIAESSG 120 KKLNLDLEFT LGRSL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g02130.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-84 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017408097.1 | 9e-84 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
TrEMBL | A0A0L9TN65 | 2e-80 | A0A0L9TN65_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R3E8 | 2e-80 | A0A0S3R3E8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156399.1 | 8e-55 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 5e-21 | G2-like family protein |
Publications ? help Back to Top | |||
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