PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g01840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22896.3 Da    PI: 9.7182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g01840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-21942134
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdae
  Vang11g01840.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAE 42
                    79******************************97 PP

2K-box14.12e-0641661238
           K-box 12 akaeslqqelakLkkeienLqreqRhl 38
                    a + +++ e+++Lk++i+ Lqr++R +
  Vang11g01840.1 41 A-EGNWTIEYTRLKAKIDLLQRNHRYI 66
                    4.679*******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.488142IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-19142IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-22152IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-18323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-182338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEGNWTIEYT RLKAKIDLLQ  60
RNHRYIIEDS CTLLALYGRR FRFNEPKRAS ESGAANQLMY ESISELQKKV FAQILSHLYE  120
KVIQEQNNML AKKIKEKEKV AAQQAQWDHP NHGVNASFLL PQPLLNMGGN YREEAPEVGR  180
NELDLTLEPL YSCHLGCF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g01840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5887441e-119AB588744.1 Vigna unguiculata VuAP1 mRNA for APETALA1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507468.12e-97truncated transcription factor CAULIFLOWER A-like
RefseqXP_020229986.12e-97truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S76e-71AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0L9TN644e-99A0A0L9TN64_PHAAN; Uncharacterized protein
STRINGGLYMA16G13070.18e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-47MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]