PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g01250.1
Common NameLR48_Vigan01g164600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 396aa    MW: 42385.6 Da    PI: 6.5947
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g01250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.32.6e-21286348163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l se+
  Vang11g01250.1 286 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRSEYEQLLSEN 348
                     89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-29196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-48115253No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-18279345No hitNo description
SMARTSM003383.1E-22286350IPR004827Basic-leucine zipper domain
PfamPF001707.5E-20286348IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093288351IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-11289345No hitNo description
CDDcd147029.49E-23291341No hitNo description
PROSITE patternPS000360293308IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGSSDMDKTP KEKESKTPPA TSQEQSPTTG MATINPDWSN FQTYSPIPPH SFLASSPQAH  60
PFMWGVQHVM PPYGTPPHPY VAMYPHGGIY AHPSIPPGNN PGTIEVGAKP PEVKEKLPVK  120
RSKGSASGGS LNMWITGKNS ELGKTNGESA NGIHSKSGDS ASDGTSEGSG ENSQNDSQLK  180
SGERQDSFED EPSQNGSSAP QNGVHSRPQT LVNQTMPAIP ISTASAPGAI PGPTTNLNIG  240
MDYWGTPTSS VIPALHGKVS STAVAGGMIT AGSRDGVQSQ IWLQDERELK RQRRKQSNRE  300
SARRSRLRKQ AECDELAQRA DVLKEENATL QAEVSRIRSE YEQLLSENAS LKERLGEIPG  360
VATPGNEDVR SGQNDQHVTN DTQQSRQKEA VQGVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRSRLRK
2302309RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g01250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697900.0AF369790.1 Phaseolus vulgaris bZIP transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442683.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-137BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0L9TNG10.0A0A0L9TNG1_PHAAN; Uncharacterized protein
STRINGXP_007156287.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-129basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]