PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g01230.1 | ||||||||
Common Name | LR48_Vigan01g164900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 413aa MW: 44814.1 Da PI: 8.5503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4e-05 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k Fs+ L H+r H Vang11g01230.1 32 FTCDICNKGFSSGKALGGHMRIH 54 89*******************99 PP | |||||||
2 | zf-C2H2 | 21.7 | 5.2e-07 | 87 | 108 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk+Fs++ +L H+r+H Vang11g01230.1 87 TCSVCGKTFSSRKSLFGHMRSH 108 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.22E-10 | 30 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 30 | 55 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0038 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.2E-9 | 32 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.759 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-10 | 81 | 108 | No hit | No description |
SMART | SM00355 | 5.7E-4 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.905 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 87 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-7 | 88 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 95 | 257 | 277 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MCVRENRGSV PPEGEGLGGN GGGVNCNEIR SFTCDICNKG FSSGKALGGH MRIHNLSRKR 60 VHGEKQSTGD AAKSKTAKWV MVDGNPTCSV CGKTFSSRKS LFGHMRSHTE KPRKGIRSNA 120 PIVRASSNST SSSTLSDDLT VHLSLVLRGW SVTAKRGRIS SSCSKSDSGL EEGDEIEPRM 180 QEAAYVLMLL ARGSPKCEQV VVADQIQEHP FNKRGREEEL SHPVLGNSDD VKIKKRNRKK 240 VKLTELASTG EEGNRFARCR KCNTSFPSHQ SLNDHLCSLQ NSKNIESRSH GVSATKEEHH 300 AKTTIQGEKT GPGTVLEDRA VEAMRGYECE VLKETFSIGQ AFGDHKRSDW TRMGEGQSAQ 360 ATSSNMGNGQ NCSKVLSFDL NQIPAMDGEE GVQSDLFIPA NIMTSSSYDS SC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g01230.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417741.1 | 0.0 | PREDICTED: zinc finger protein 181-like | ||||
TrEMBL | A0A0L9TND0 | 0.0 | A0A0L9TND0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R442 | 0.0 | A0A0S3R442_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156283.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 2e-14 | C2H2 family protein |
Publications ? help Back to Top | |||
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