PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g01040.1
Common NameLR48_Vigan01g162300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 476aa    MW: 52615.6 Da    PI: 7.6116
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g01040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.4e-39120179261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+g+rknk+s
  Vang11g01040.1 120 PDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHS 179
                     78999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-28117177IPR003851Zinc finger, Dof-type
PfamPF027013.8E-32121178IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.416124178IPR003851Zinc finger, Dof-type
PROSITE patternPS013610126162IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSQVRDSAIK LFGADIHTTH TPIKPTTPFP DLHSLTRIQP LLQPIIVMNG LEESVNDEVD  60
VPLKEEVSSK QIDPQEDGND TPRDICKNPT LKLVGKVVHR TNEHRNAKRN IDQEKVFKKP  120
DKVLQCPRCN SLETKFCYFN NYNVNQPRHF CKNCQRYWTA GGAIRNVPVG AGKRKNKHSA  180
LQYYQKPVTP DGESAIQTHS SGSSDDMILS SNELSVTSRP IREREENPLS ESVETVLSLN  240
GQRKFDVDFS TVKDDGEDPS SSSMRSNEME QVGLAQHFNG LIPLHSFHYH PVPSWSYQWN  300
PCWNVKEFRS SSTSYTGSPT MMAVSGFSIP TVMPPAAPYS YSGFMSNLAG QEEESSLIGS  360
AFSGISLSSS SVSNSTSSGN TSPALGKHSR DGSTPKEGAM KQNLWVPKTV RINGPEEAAN  420
SSIWTTLGTK SEQNKIIIKG SVFKSFESKT SADDNQIRRT NPAAFSRSES FQESM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g01040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424826.10.0PREDICTED: cyclic dof factor 3-like
TrEMBLA0A0L9TNP40.0A0A0L9TNP4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4450.0A0A0S3R445_PHAAN; Uncharacterized protein
STRINGXP_007156312.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-53cycling DOF factor 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]