PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1163s00010.1
Common NameLR48_Vigan06g083700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 483aa    MW: 53252.3 Da    PI: 4.6905
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1163s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.41.3e-25211052102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed++++ ++sws+++nsf+v+d+ efa+++LpkyFkh+nf+SF       gF+kv+ ++         weF+++ F +g+k+ll
  Vang1163s00010.1  21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSF-------GFRKVDPDR---------WEFANEGFLRGQKHLL 97 
                       9********************999***************************9.......9*****999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Vang1163s00010.1  98 RNITRRKP 105
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-2816103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5217103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-2918103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2221103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-122144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-125971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDSGASAPTA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL  60
PKYFKHNNFS SFGFRKVDPD RWEFANEGFL RGQKHLLRNI TRRKPAHGQN HQQAQQPHGQ  120
SSSVGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ QTTDNQLQTM VQRLQGMEQR  180
QQQMMSFLAK AVQSPGFFAQ FVQQNESNRR ISEVNKKRRL KQEGIAETVS AATPDGQIVK  240
YQPLANEAAK AMLKQIMKWD TSRVESFNKN PEEYIIGDAS SSSSGMDSSG SSGWTSGVTL  300
KEVSPASVQS SHVPAATGTQ GHVRPTVKPE FPSVPQAVAS ENVTKDGGHG VPSIPVSQAD  360
MVIPDLPPIT EMVTGNMLDI PEENYMATES DEGYMDPSLG DAGSFPIDFE VISPDNIDDF  420
LGNPSIWDEI LQTPVPEDID TNIADVSNGN EVQSTENGWS KTQRMDHLTE QMGLLSSDTK  480
RV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221310318129Heat shock factor protein 1
5d5v_B5e-221310318129Heat shock factor protein 1
5d5v_D5e-221310318129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214221NKKRRLKQ
2215220KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1163s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427697.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-162HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0L9US520.0A0A0L9US52_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3260.0A0A0S3T326_PHAAN; Uncharacterized protein
STRINGXP_007158271.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-118heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]