PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1118s00020.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 273aa    MW: 30501.3 Da    PI: 9.1652
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1118s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly29.99.9e-1075121147
            Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerky 47 
                       svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a+++ +  y
  Vang1118s00020.1  75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVVQDSY 121
                       79***************************************998887 PP
2Whirly61.91.3e-1914523354139
            Whirly  54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk...gnesfsvPvskaefavlrsllv 139
                       +f+ls+ e+++l++l++ es ef  ++a+ +sn  +vrk+lk+ePl d +G+ ++lsv ++  +    +e++++P+ +a+ avlrs+++
  Vang1118s00020.1 145 VFSLSVSEMGTLISLGAMESWEFSRETAKAKSNGIEVRKVLKMEPLLDATGHSFSLSVYKKPANmeeIEENIYLPIRRAQLAVLRSIFN 233
                       7*********************************************************9875551116789****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.1E-4365253IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.49E-3468270IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.3E-1076123IPR013742Plant transcription factor
PfamPF085362.0E-19145231IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSHIVYSLPL KHLSLPFHSF VPRKFIVPLN RNFSFIFPTS LSVRCNHSNI VEPFPPLPQY  60
PSVAELPQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVVQDS  120
YVFALQMYKC VVDISLSGCL GATLVFSLSV SEMGTLISLG AMESWEFSRE TAKAKSNGIE  180
VRKVLKMEPL LDATGHSFSL SVYKKPANME EIEENIYLPI RRAQLAVLRS IFNYIVPYLL  240
GWSAFASTIK AEVYSQMNSA NPRYSANNER NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A2e-50662515170Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B2e-50662515170Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C2e-50662515170Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D2e-50662515170Single-stranded DNA-binding protein WHY1, chloroplastic
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1118s00020.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-99AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521214.11e-167single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0S3T2401e-173A0A0S3T240_PHAAN; Uncharacterized protein
STRINGXP_007157686.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.12e-58ssDNA-binding transcriptional regulator