PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g07110.2 | ||||||||
Common Name | LR48_Vigan11g010200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 392aa MW: 42069.7 Da PI: 8.645 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.7e-41 | 96 | 172 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Vang10g07110.2 96 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 172 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-33 | 90 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.804 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-38 | 94 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-30 | 96 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDWNLKAASW DLSEVNQANL PNMETVEGSS RYGMFTSKGE FSVDLKLGQV GNSGTESVLT 60 KSKDAVGLSK ISSSSSSSGS SKRARALGNA TQTVSCLVDG CHSDLSNCRD YHRRHKVCEV 120 HSKTAQVTIG GQKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QPEPLTRFGA 180 DISSGSPHSY TNVKSTQLLP FSSSHVYPST TVMNPTWGGI VASGDVRIHG HNQQGELFLG 240 TSPTGYKEGK QLAFLQGDHT LNNQSPHLAG ASVGQAHMFL RTGPYSESSG LRCKMLCDSL 300 TSSVHDSSSR ALSLLSSPQP HSPGNGLSQI VNPHSPLMQP LGLSLHDGNS LGPVDPVLGL 360 NGSDHSSSMY NIGSNGSQGN EASPVFPFQW G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 96 | 169 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 169 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g07110.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017440759.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_017440760.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_017440761.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_017440762.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A0L9VPU0 | 0.0 | A0A0L9VPU0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QXP0 | 0.0 | A0A0S3QXP0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160020.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-68 | SBP family protein |
Publications ? help Back to Top | |||
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