PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04860.1
Common NameLR48_Vigan01g002500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 313aa    MW: 35230.1 Da    PI: 9.898
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind325.31.8e-9923122301
       GAGA_bind   2 dddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalve 76 
                     +d  ++e  r+k  yy+              ++ ++l   +++++ s++aer+a i   e ++a+sek++a+a+rd+a  qrd+al +r++a++e
  Vang10g04860.1   2 EDGRQNEndRHKMeYYRgphsmwntgsqhqvKEpNALV--MNKKIRSILAERQATIleLELEAAISEKNEALAARDEAIRQRDEALVQRDNAILE 94 
                     55544444599988999999999999877663335666..99**************77677889******************************* PP

       GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
                     rdn+l+al+ ++ s   + p+g+++  g+k i+++ + +   +++ a+++++ + +++ p  +++ +++++k++k+++   ++ ++   k+kk +
  Vang10g04860.1  95 RDNALAALQSRNSS--VTFPFGSGIQCGSKRIHHSSN-HLCIMSEAAYKTKDASPITVIP--SEVVKSHQAKRTKENKVIGSKASNPPYKVKKMG 184
                     *********97776..78899************8887.6689999999999888887777..566777777777778888888888999****99 PP

       GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                     e+ ++k + e+  ++ ++e+  +d++ln v++De+t+PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S++PLP+ +++r+aRi+grKmS+++f+
  Vang10g04860.1 185 EDLNRKASFEG--TKIRSEWHRQDVGLNLVTFDETTMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFT 277
                     99999999998..57******************************************************************************** PP

       GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +lL++L  eG+dls p+DLk++WA+HGtn+++ti+
  Vang10g04860.1 278 RLLSRLVLEGHDLSIPLDLKEYWARHGTNRYITIK 312
                     **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.7E-1231312IPR010409GAGA-binding transcriptional activator
PfamPF062174.3E-9213312IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEDGRQNEND RHKMEYYRGP HSMWNTGSQH QVKEPNALVM NKKIRSILAE RQATILELEL  60
EAAISEKNEA LAARDEAIRQ RDEALVQRDN AILERDNALA ALQSRNSSVT FPFGSGIQCG  120
SKRIHHSSNH LCIMSEAAYK TKDASPITVI PSEVVKSHQA KRTKENKVIG SKASNPPYKV  180
KKMGEDLNRK ASFEGTKIRS EWHRQDVGLN LVTFDETTMP VPVCTCTGIP RQCYKWGNGG  240
WQSSCCTTTL SMHPLPQLPN KRHARIGGRK MSGSVFTRLL SRLVLEGHDL SIPLDLKEYW  300
ARHGTNRYIT IK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412348.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_017412354.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-123BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0L9TJ380.0A0A0L9TJ38_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QXT10.0A0A0S3QXT1_PHAAN; Uncharacterized protein
STRINGXP_007159983.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-124basic pentacysteine 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]