PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04720.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 276aa    MW: 31058.5 Da    PI: 6.4395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20147196255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae+Aa+a+++a ++++g
  Vang10g04720.1 147 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEDAARAYDEASLRFRG 196
                     8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-33146205IPR001471AP2/ERF domain
PfamPF008471.1E-13147196IPR001471AP2/ERF domain
CDDcd000181.43E-34147206No hitNo description
SuperFamilySSF541717.19E-23147205IPR016177DNA-binding domain
PROSITE profilePS5103225.027147204IPR001471AP2/ERF domain
SMARTSM003801.7E-35147210IPR001471AP2/ERF domain
PRINTSPR003673.0E-12148159IPR001471AP2/ERF domain
PRINTSPR003673.0E-12170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPMMFSGLDR EREMSAMIYA LTQVVTGEEH DHDHDHDHSL LHQNIDKSAI GGGGGDGFTI  60
TSNVDSGPIA PSSACSSYCG NSVPKRRREG DDTSDLPRGT SFPAISTYGV GESSSRMRKE  120
RREMENKVYD YEYRAEKVGM EEEPKRKYRG VRQRPWGKWA AEIRDPFKAT RVWLGTFETA  180
EDAARAYDEA SLRFRGNKAK LNFPENVRLR HQSPEPPPAA PLFSIPSTTE PIVHTQPQGS  240
HDSGNFYEYC YSHDMIKIDK QCIPNVESRT HLTEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-24146207163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438003.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0L9TKE60.0A0A0L9TKE6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYB40.0A0A0S3QYB4_PHAAN; Uncharacterized protein
STRINGXP_007159794.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-33ERF family protein