PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04390.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 291aa    MW: 32148.2 Da    PI: 6.5092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08146186954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vang10g04390.1 146 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 186
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-12143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-14143196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-11143191No hitNo description
PfamPF000105.7E-6147186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDTNQNTTTS AFTNVNTTWN LEKMETNEQH QHHDHIILQV QDPLASGIWS NNYPHSHNPN  60
LLQMHQTPPT TTSSVVAPPS SSGFLGDILG VHSMEEDEEP EEELGAMKEM MYKIAAMQPV  120
DIDPATIRKP KRRNVRISDD PQSVAARHRR ERISEKIRIL QRLVPGGTKM DTASMLDEAI  180
RYVKFLKRQI RLLQSIPHPS QPPQCIGFAT TNASTLLLAP SCDWSFAPNV LLSSTAVTAA  240
TASSSSMDMP AGLGFDGHGH GCDDVITSFV SDNVLMPKGV KRENSWRDRS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430851.10.0PREDICTED: transcription factor HEC3-like
RefseqXP_017430858.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A0L9TJ560.0A0A0L9TJ56_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SWB70.0A0A0S3SWB7_PHAAN; Uncharacterized protein
STRINGXP_007159828.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-48bHLH family protein