PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g04310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40588.9 Da PI: 4.9766 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.9 | 4.5e-45 | 40 | 167 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pGfrFhP+ elvv++Lk+kv gkk+ +i+e+diyk+ PwdLp k +++++e ewyfF++ +kky +g+r +rat+ gyWkatg+d++v Vang10g04310.1 40 LKPGFRFHPSGVELVVYFLKRKVMGKKFFG-GAIAELDIYKYAPWDLPaKsCLRTGELEWYFFCPLEKKYGSGSRIKRATEIGYWKATGRDRSVQ 133 579************************887.88**************95357777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+ +tL+f+kg++pkge+t+Wvmhe rl Vang10g04310.1 134 Y-NNKTVGMIRTLIFHKGKSPKGERTNWVMHEHRL 167 9.999***************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 33 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.933 | 40 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-21 | 42 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
LFAHEVSIQI LKVNYNNKKK NKNESVVWCF IFDSMAVSRL KPGFRFHPSG VELVVYFLKR 60 KVMGKKFFGG AIAELDIYKY APWDLPAKSC LRTGELEWYF FCPLEKKYGS GSRIKRATEI 120 GYWKATGRDR SVQYNNKTVG MIRTLIFHKG KSPKGERTNW VMHEHRLEDK DLAGKGIAQN 180 SYVVCKVFEK EGLGPRNGAQ YARPFNEEEW SDEELEIPCT ASTAPVPILP MTSDASVPKD 240 NSVPASGCTS CLSRSMPLPG TADPSDPNDQ VVNNDDEDIL RMNDISEDGD KLFEKPDNDQ 300 ENIAGGVPPL AELFVGLDAY LDAYHAAISS GQNAEFSTNG MVTTDDVWSL DFIELSDLDI 360 SLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-42 | 33 | 191 | 13 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g04310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438061.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
TrEMBL | A0A0L9TJJ1 | 0.0 | A0A0L9TJJ1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QY50 | 0.0 | A0A0S3QY50_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159836.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-88 | NAC domain containing protein 103 |