PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 364aa    MW: 40588.9 Da    PI: 4.9766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.94.5e-45401671128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l pGfrFhP+  elvv++Lk+kv gkk+    +i+e+diyk+ PwdLp k +++++e ewyfF++ +kky +g+r +rat+ gyWkatg+d++v 
  Vang10g04310.1  40 LKPGFRFHPSGVELVVYFLKRKVMGKKFFG-GAIAELDIYKYAPWDLPaKsCLRTGELEWYFFCPLEKKYGSGSRIKRATEIGYWKATGRDRSVQ 133
                     579************************887.88**************95357777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+ +tL+f+kg++pkge+t+Wvmhe rl
  Vang10g04310.1 134 Y-NNKTVGMIRTLIFHKGKSPKGERTNWVMHEHRL 167
                     9.999***************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5433190IPR003441NAC domain
PROSITE profilePS5100551.93340190IPR003441NAC domain
PfamPF023652.5E-2142167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
LFAHEVSIQI LKVNYNNKKK NKNESVVWCF IFDSMAVSRL KPGFRFHPSG VELVVYFLKR  60
KVMGKKFFGG AIAELDIYKY APWDLPAKSC LRTGELEWYF FCPLEKKYGS GSRIKRATEI  120
GYWKATGRDR SVQYNNKTVG MIRTLIFHKG KSPKGERTNW VMHEHRLEDK DLAGKGIAQN  180
SYVVCKVFEK EGLGPRNGAQ YARPFNEEEW SDEELEIPCT ASTAPVPILP MTSDASVPKD  240
NSVPASGCTS CLSRSMPLPG TADPSDPNDQ VVNNDDEDIL RMNDISEDGD KLFEKPDNDQ  300
ENIAGGVPPL AELFVGLDAY LDAYHAAISS GQNAEFSTNG MVTTDDVWSL DFIELSDLDI  360
SLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-423319113169NAC domain-containing protein 19
3swm_B6e-423319113169NAC domain-containing protein 19
3swm_C6e-423319113169NAC domain-containing protein 19
3swm_D6e-423319113169NAC domain-containing protein 19
3swp_A6e-423319113169NAC domain-containing protein 19
3swp_B6e-423319113169NAC domain-containing protein 19
3swp_C6e-423319113169NAC domain-containing protein 19
3swp_D6e-423319113169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438061.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A0L9TJJ10.0A0A0L9TJJ1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QY500.0A0A0S3QY50_PHAAN; Uncharacterized protein
STRINGXP_007159836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-88NAC domain containing protein 103