PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g03500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 623aa MW: 68764.9 Da PI: 7.8182 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.2 | 4.4e-25 | 105 | 206 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF +++ Vang10g03500.1 105 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RSE 195 89****************************986445444..8************************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ Vang10g03500.1 196 NGELCVGIRRA 206 999******97 PP | |||||||
2 | Auxin_resp | 89.6 | 5.5e-30 | 223 | 288 | 19 | 83 |
Auxin_resp 19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ast+eF++k+++v++a++++++ GmRfkmafeted+s++++ +Gt+++v+ ldp+rWpnS+Wr+L+ Vang10g03500.1 223 ASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWfMGTIASVQVLDPIRWPNSPWRLLQ 288 799*************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-38 | 95 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-29 | 100 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-22 | 104 | 205 | No hit | No description |
PROSITE profile | PS50863 | 13.578 | 105 | 207 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-23 | 105 | 206 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-23 | 105 | 207 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-24 | 222 | 288 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.923 | 510 | 590 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MKEGEKVLDP QLWHACAGGM VQMPKVNSKV FYFPQGHAEH AHTNIDLRVP PHILCNVEAV 60 KFMADPETDE VFAKLSLVPL RNSEPGPDAE GGADVAEASE KPASFAKTLT QSDANNGGGF 120 SVPRYCAETI FPRLDYSAEP PVQTVVAKDV QGETWRFRHI YRGTPRRHLL TTGWSSFVNQ 180 KKLVAGDSVV FLRSENGELC VGIRRAKKGI GFEVWNSASG SGASTPEFCI KASSVRAAMR 240 IQWCSGMRFK MAFETEDASR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT WDEPDLLQNV 300 KRVSPWLVEL VSNLPVINFT PFSPPRKKLR FPQHPEFPLD VQFPIPPFSG NQLGPNHPLC 360 GFSDNAPAGI QGARHAQIGT SLSDLHLNSK LQLGLLPSNI QQHGLYSGIS SGNTTNHDKS 420 KESLSHLLTI GKSSKTLEKS DDVKKHQFLL FGQPILTEQQ ISGDLLSRGK KSPDDVKDKE 480 KCFVDDSQSA LFSSGKASAA EFSWQLGLDT GHCKVFLESE DVGRTLDLSR LGSYEELYRR 540 LSYMFGVERS EIPNYVFYYD AKGAVKQTGE EPFSDFMKTA KRLTILTDSG SKNVTRAFIT 600 GTRNGEHGLD ASNKTGPLSI FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-79 | 7 | 309 | 50 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g03500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518437.1 | 0.0 | auxin response factor 10-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1S3VJP7 | 0.0 | A0A1S3VJP7_VIGRR; Auxin response factor | ||||
STRING | GLYMA11G20490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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