PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g03220.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 370aa MW: 42267.1 Da PI: 6.7489 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.1 | 1.2e-10 | 83 | 112 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k +rr+++NReAAr+sR+R+ka++++Le Vang10g03220.4 83 DKTQRRLAQNREAARKSRLRRKAYVQQLES 112 699*************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.5E-4 | 80 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.7E-7 | 83 | 128 | No hit | No description |
Pfam | PF00170 | 8.1E-8 | 84 | 112 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.59E-7 | 84 | 125 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.2E-29 | 171 | 245 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDASSSQFVS SRRMEVVYDP IHQISMWEEN FKSNANTLTA STSIIEELDM KFDNQVQAQS 60 EEVSHGIFGT SVKYNQDHNR LVDKTQRRLA QNREAARKSR LRRKAYVQQL ESCRLKLMQL 120 EQEVDHAKRQ GLYIGDGLGS NNLGFAGSVN SGIAIFKMEY EHWVEEQNRH ILEMRTALSS 180 EIGDMQLGNL VQSIMNHYSK LFSMKSAAAK ADVFYVMSGM WMTTAERFFL WIGGFRPSEL 240 LKVLIPLSGP LTEQQLFDTY GLEKSCQQAE DALSQGMEKL QQMLADSVGR GHLVEGTHIP 300 QMDTAMERLE ALVSFVNQAD HLRQETLRQM YRILSIHEIG QFLLVLGEYF QRLRALSKLW 360 ANRSREALP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g03220.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-153 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413512.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413520.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413528.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413536.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413543.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413551.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413560.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_017413568.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Swissprot | Q39237 | 1e-162 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A0S3QYI6 | 0.0 | A0A0S3QYI6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159742.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-164 | bZIP family protein |