PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g03220.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 370aa    MW: 42267.1 Da    PI: 6.7489
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g03220.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-1083112433
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                     +k +rr+++NReAAr+sR+R+ka++++Le 
  Vang10g03220.4  83 DKTQRRLAQNREAARKSRLRRKAYVQQLES 112
                     699*************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-480140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-783128No hitNo description
PfamPF001708.1E-884112IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.59E-784125No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
PfamPF141443.2E-29171245IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDASSSQFVS SRRMEVVYDP IHQISMWEEN FKSNANTLTA STSIIEELDM KFDNQVQAQS  60
EEVSHGIFGT SVKYNQDHNR LVDKTQRRLA QNREAARKSR LRRKAYVQQL ESCRLKLMQL  120
EQEVDHAKRQ GLYIGDGLGS NNLGFAGSVN SGIAIFKMEY EHWVEEQNRH ILEMRTALSS  180
EIGDMQLGNL VQSIMNHYSK LFSMKSAAAK ADVFYVMSGM WMTTAERFFL WIGGFRPSEL  240
LKVLIPLSGP LTEQQLFDTY GLEKSCQQAE DALSQGMEKL QQMLADSVGR GHLVEGTHIP  300
QMDTAMERLE ALVSFVNQAD HLRQETLRQM YRILSIHEIG QFLLVLGEYF QRLRALSKLW  360
ANRSREALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g03220.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-153AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413512.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413520.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413528.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413536.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413543.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413551.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413560.10.0PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_017413568.10.0PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392371e-162TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0S3QYI60.0A0A0S3QYI6_PHAAN; Uncharacterized protein
STRINGXP_007159742.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-164bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]