PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g02220.1 | ||||||||
Common Name | LR48_Vigan11g085800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25777.8 Da PI: 5.1777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.7e-18 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Vang10g02220.1 47 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 97 68*****998.**********854...59**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-12 | 47 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-36 | 48 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 48 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 48 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-31 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDVVAKSAPK ESSSSASTRK HSSPEAHLAG PDHKKPKQAR DSSSKHPVYR GVRMRAWGKW 60 VSEIREPRKK NRIWLGTFAT AEMAARAHDV AALAIKGNSA ILNFPELAGS LPRPDSNSPR 120 DVQVAAAKAA AMEVMDPPTT PSWTLSQSSS SSSGETSTAD ELGEIVELPS LGTSLEIPER 180 SEEVVFVEPV GGWLYSEAWC DGIYGDRECG GYFIGDEISM QESESMILCG FEGSLWQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-19 | 39 | 105 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g02220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441737.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 4e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0L9VRX7 | 1e-166 | A0A0L9VRX7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QX08 | 1e-166 | A0A0S3QX08_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160302.1 | 1e-136 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-51 | ERF family protein |
Publications ? help Back to Top | |||
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