PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g02020.3
Common NameLR48_Vigan11g084300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 271aa    MW: 29340.1 Da    PI: 7.2448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g02020.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000321351731255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vang10g02020.3 135 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 173
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.937123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-6133177No hitNo description
SuperFamilySSF474592.75E-10133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-8137179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LFLIVCTVLG NRSGMVSEEE KGAMCQVQQQ MLSQASRVPI VDVKQEGSVN SYVYGHGNEE  60
FHPAKPTWPQ IMPSSSPKSC VTSFSSSMLD FSNSNTDARP PPPDPSSECN STAAGGAFKK  120
ARVQPPTTQT TFKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQNQIEALS  180
LPYLGNGSGN MRQQQSVQGE KNCIFPEDPG QLLNENCLKR KATSEKDSEE EAKKDLRSRG  240
LCLVPVSCTL QVGSDNGADY WAPAFGGGFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g02020.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440811.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D11e-85BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0L9VRW20.0A0A0L9VRW2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QX340.0A0A0S3QX34_PHAAN; Uncharacterized protein
STRINGXP_007160320.11e-173(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]