PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g02020.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 377aa    MW: 41461.7 Da    PI: 7.7186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g02020.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00052412791255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vang10g02020.2 241 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 279
                     6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.937229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-6239283No hitNo description
SuperFamilySSF474594.71E-10239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-7243285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
LLVFPLLNQN LSNNLRSEQR LPLFFCRDHS KIQKAMNRGV LQSSPVQQMM AANPNNWWNI  60
NTMRPPPPSP PPPSQPSSPF FSTPSNFLTP YNTSSSLPLP SWHDNNQELP ESWSQLLMSG  120
MVSEEEKGAM CQVQQQMLSQ ASRVPIVDVK QEGSVNSYVY GHGNEEFHPA KPTWPQIMPS  180
SSPKSCVTSF SSSMLDFSNS NTDARPPPPD PSSECNSTAA GGAFKKARVQ PPTTQTTFKV  240
RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQN QIEALSLPYL GNGSGNMRQQ  300
QSVQGEKNCI FPEDPGQLLN ENCLKRKATS EKDSEEEAKK DLRSRGLCLV PVSCTLQVGS  360
DNGADYWAPA FGGGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g02020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440811.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D11e-98BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0L9VRW20.0A0A0L9VRW2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QX340.0A0A0S3QX34_PHAAN; Uncharacterized protein
STRINGGLYMA05G35610.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]