PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g02020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42794.4 Da PI: 7.9878 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00052 | 251 | 289 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Vang10g02020.1 251 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 289 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.937 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-6 | 249 | 293 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-10 | 249 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 253 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
LLVFPLLNQN LSNNLRSEQR LPLFFCRDHS KIQKAMNRGV LQSSPVQQMM AANPNNWWNI 60 NTMRPPPPSP PPPSQPSSPF FSTPSNFLTP YNTSSSLPLP SWHDNNQELP ESWSQLLMSG 120 MVSEEEKGAM CQVQQQMLSQ ASRVPIVDVK QEGSVNSYVY GHGNEEFHPA KPTWPQIMPS 180 SSPKSCVTSF SSSMLDFSNS NTDARPPPPD PSSEFLFFIY FILKCNSTAA GGAFKKARVQ 240 PPTTQTTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQN QIEALSLPYL 300 GNGSGNMRQQ QSVQGEKNCI FPEDPGQLLN ENCLKRKATS EKDSEEEAKK DLRSRGLCLV 360 PVSCTLQVGS DNGADYWAPA FGGGFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g02020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017440811.1 | 0.0 | PREDICTED: transcription factor bHLH68-like | ||||
Swissprot | Q8S3D1 | 4e-95 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A0L9VRW2 | 0.0 | A0A0L9VRW2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QX34 | 0.0 | A0A0S3QX34_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA05G35610.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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