PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g01990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CPP | ||||||||
Protein Properties | Length: 615aa MW: 66301 Da PI: 7.5434 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.4 | 3.4e-14 | 89 | 128 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C N+ e+ Vang10g01990.1 89 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCYNNVEN 128 89**************************.********9875 PP | |||||||
2 | TCR | 50.8 | 3.2e-16 | 173 | 212 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Vang10g01990.1 173 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 212 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.0E-16 | 88 | 128 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.11 | 89 | 213 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.4E-11 | 90 | 125 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 173 | 214 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 176 | 211 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MGEGEGEGSD CAPKNVVPND VVANALLPSD VPAKKLARQL DFTGFGGMPP QSPVVLPLPP 60 SASVRVGKPE SPKSRPRPGF EIKEATPKKQ KQCNCKHSKC LKLYCECFAS GIYCDGCNCV 120 NCYNNVENEA ARREAVEATL ERNPNAFRPK IASSPHGTRD SREDAGEILI LGKHNKGCHC 180 KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSEERQAL FHGDQNNNMV YIQQAANAAI 240 TGAIGSSGYS SPPISKKRKG QELLFGSTIK DPSLGRLGQQ EEGPSQKANP LSRWPQGLRF 300 HLEQVFLWFV FTVSRLPRSC QLASVKAPFV VTQACQESPC LKTSLANNVR VPAPSSSMSP 360 IPGARVGPAT LGPSKLMYRS LLADIIQPQH LKELCSVLVL VSGQAAKTFT DQKNLMDKHA 420 EDHTETSLAS STHEQLPNQK EANVEKAMAD DDCLSANQTD KISPDNSCSD GADVPKGRPM 480 SPGTLALMCD EQDTMFMTSA SPIGSRAHAC NTSSQPPYGQ GMTEVYAEQE KIVLTKFRDF 540 LNRVITMGEI NETKCSSLAR SELESEKDPN NNCTGNTSTE TAHQQGTTNN VVAKAAGNIT 600 STSSFPGGSL IPEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-32 | 81 | 222 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-32 | 81 | 222 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g01990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028233843.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-160 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A445KT98 | 0.0 | A0A445KT98_GLYSO; Protein tesmin/TSO1-like CXC 5 isoform A | ||||
STRING | GLYMA05G35561.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-93 | Tesmin/TSO1-like CXC domain-containing protein |