PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g01570.1
Common NameLR48_Vigan11g079100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 295aa    MW: 32825.8 Da    PI: 6.2943
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g01570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.7e-4851231121
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv++ +++  +v++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdke++  
  Vang10g01570.1   5 LPPGFRFHPTDEELITYYLLRKVSDVSFTS-KVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFG- 97 
                     79*************************999.89***************988999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdW 121
                     +g l+g+kktLvfy grap+gek++W
  Vang10g01570.1  98 GGVLIGMKKTLVFYMGRAPRGEKSNW 123
                     ************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-543134IPR003441NAC domain
PROSITE profilePS5100546.1535152IPR003441NAC domain
PfamPF023653.1E-236123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLLRKVSDV SFTSKVVAVV DLNKSEPWDL PGKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TESGYWKTTG KDKEIFGGGV LIGMKKTLVF YMGRAPRGEK  120
SNWEEWVICR VFQKSSAPKK AQQTSSSQPS QESPTSMANE FGDADLPNLN SIANSSSVAA  180
QIYNSTGDPS NVSTNMNSTM NWPSATELPS LPWPSGLMLN PNLSVNSLLL RALQLRSTYQ  240
QREAATGDHF ATYVPQTFPH NNIGTDNLTP NLSVSASSRT LELQEQPFNM DSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50414016171NO APICAL MERISTEM PROTEIN
1ut4_B3e-50414016171NO APICAL MERISTEM PROTEIN
1ut7_A3e-50414016171NO APICAL MERISTEM PROTEIN
1ut7_B3e-50414016171NO APICAL MERISTEM PROTEIN
3swm_A3e-50414019174NAC domain-containing protein 19
3swm_B3e-50414019174NAC domain-containing protein 19
3swm_C3e-50414019174NAC domain-containing protein 19
3swm_D3e-50414019174NAC domain-containing protein 19
3swp_A3e-50414019174NAC domain-containing protein 19
3swp_B3e-50414019174NAC domain-containing protein 19
3swp_C3e-50414019174NAC domain-containing protein 19
3swp_D3e-50414019174NAC domain-containing protein 19
4dul_A3e-50414016171NAC domain-containing protein 19
4dul_B3e-50414016171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g01570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441934.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
SwissprotQ9FLJ26e-70NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0L9VS300.0A0A0L9VS30_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QWT00.0A0A0S3QWT0_PHAAN; Uncharacterized protein
STRINGXP_007160376.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.19e-87NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]