PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g00980.1

Common Name

LR48_Vigan325s004600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 371aa MW: 42423.9 Da PI: 4.7256

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g00980.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	2.8e-35	23	114	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk y+++ed++++++i+ws+ g+sfv++d+++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k++++ weF++++F +g+k+ll++ Vang10g00980.1 23 FLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDC---------WEFANENFVRGQKQLLKN 108 9*************************************************************9987.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ Vang10g00980.1 109 IRRRKH 114 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	4.62E-35	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-55	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.6E-37	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.7E-18	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.0E-32	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-18	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
LFVVLAMVKS NENGSGSGAV PPFLKKCYDM VEDRNTDSVI RWSDGGDSFV ISDTTQFSVT 60 LLPTYFKHNN FSSFIRQLNI YGFRKIDTDC WEFANENFVR GQKQLLKNIR RRKHPHVADQ 120 QKALPQNDNS DEPSQEVPHH GLWKEVENLK SDKNSLTQEL VKLRQHQESA ENKLLLLSDR 180 LQGMEKHQQQ MLSFLVMVVQ SPGFLVQLLH PKENNWRLSE SWNVLDEDKQ DDKPIASDGM 240 IIKYKPPVGE KLKPVVPLPP AFEKQSEPEL AADGFKDLCI SSEFMKVLMD EKLSPLENHS 300 PFLLPDLPDD GSWEQLFLGS PFLGNIEDSN KESEERTDSG MEMEPIISET PNENSRTFES 360 MIVEMEKTRE *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

LFVVLAMVKS NENGSGSGAV PPFLKKCYDM VEDRNTDSVI RWSDGGDSFV ISDTTQFSVT  60
LLPTYFKHNN FSSFIRQLNI YGFRKIDTDC WEFANENFVR GQKQLLKNIR RRKHPHVADQ  120
QKALPQNDNS DEPSQEVPHH GLWKEVENLK SDKNSLTQEL VKLRQHQESA ENKLLLLSDR  180
LQGMEKHQQQ MLSFLVMVVQ SPGFLVQLLH PKENNWRLSE SWNVLDEDKQ DDKPIASDGM  240
IIKYKPPVGE KLKPVVPLPP AFEKQSEPEL AADGFKDLCI SSEFMKVLMD EKLSPLENHS  300
PFLLPDLPDD GSWEQLFLGS PFLGNIEDSN KESEERTDSG MEMEPIISET PNENSRTFES  360
MIVEMEKTRE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-26	15	112	12	120	Heat shock factor protein 1
5d5u_B	6e-26	13	112	19	129	Heat shock factor protein 1
5d5v_B	6e-26	13	112	19	129	Heat shock factor protein 1
5d5v_D	6e-26	13	112	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g00980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017406973.1	0.0	PREDICTED: heat stress transcription factor A-8
Swissprot	Q9S7U5	1e-90	HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBL	A0A0L9T9V2	0.0	A0A0L9T9V2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QWH7	0.0	A0A0S3QWH7_PHAAN; Uncharacterized protein
STRING	GLYMA08G05220.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	6e-93	heat shock transcription factor A8

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]