PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g00240.1

Common Name

LR48_Vigan05g097200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-X1

Protein Properties

Length: 827aa MW: 88757 Da PI: 7.8795

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g00240.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	25.3	3.3e-08	159	176	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C+++CH+GpC+pC Vang10g00240.1 159 CGRHRCEQICHLGPCDPC 176 ****************** PP
2	zf-NF-X1	16.4	1.9e-05	223	240	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+G C++C Vang10g00240.1 223 CGNHICIETCHPGSCGEC 240 ****************** PP
3	zf-NF-X1	17.1	1.2e-05	281	298	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH G+C pC Vang10g00240.1 281 CGIHHCEEACHAGDCSPC 298 ****************** PP
4	zf-NF-X1	18.5	4.3e-06	377	395	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H C++lCH G CppC Vang10g00240.1 377 CGQHACESLCHSGHCPPCL 395 ******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00438	0.023	104	122	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	6	106	121	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	6.71E-11	149	197	No hit	No description
Pfam	PF01422	4.7E-6	159	176	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	2.2E-4	159	178	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	8.95E-8	213	256	No hit	No description
Pfam	PF01422	0.0027	223	240	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.032	223	242	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	3.20E-12	271	319	No hit	No description
Pfam	PF01422	2.1E-4	281	298	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	7.6E-4	281	300	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	13	339	350	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	70	339	369	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	5.89E-8	367	410	No hit	No description
Pfam	PF01422	8.1E-5	377	394	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	4.1E-4	377	396	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.37	434	452	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	12	441	451	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.52	487	502	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	7.5	487	516	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	21	518	544	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.098	525	546	IPR000967	Zinc finger, NF-X1-type
Gene3D	G3DSA:3.30.70.330	4.9E-5	620	671	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009642	Biological Process	response to light intensity
GO:0009651	Biological Process	response to salt stress
GO:0009697	Biological Process	salicylic acid biosynthetic process
GO:0010188	Biological Process	response to microbial phytotoxin
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0000166	Molecular Function	nucleotide binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MVRRSAPIWS CSSCFSIFHL NCIKKWARAP TSVDVSVDKN QRFNWRCPGC QSVQLTSSKE 60 IRYVCFCGKR PDPPSDLYLL PHSCGEPCAK PLERELGGDK EVLCPHVCVL QCHPGPCPPC 120 KAFAPPRLCP CGKKNVTTRC SDRQSVLTCG QRCEKLLECG RHRCEQICHL GPCDPCEIPV 180 NASCFCSKRT ELILCGEMAL KGEIKTEGGV FSCGSTCGKK LGCGNHICIE TCHPGSCGEC 240 GLLPSHIKTC CCGKTRLKQE RQSCLDPIPT CSQVCGKTLP CGIHHCEEAC HAGDCSPCLV 300 LVSQKCRCGS TSRTVECCKT KVDAVKFTCE KPCGQKRNCG RHRCSERCCP LSNPNNVQIA 360 DWDPHFCSLP CGKKLRCGQH ACESLCHSGH CPPCLETIFT DLTCACGKTS IPPPLPCGTP 420 PPSCQLPCSV PQPCSHPASH SCHFGDCPPC SVPVAKECIG GHVILRNIPC GSKDIRCNKL 480 CGKTRQCGLH ACGRTCHLPP CDNPSTVPGT RASCGQTCGA PRRDCRHTCT APCHPSTPCP 540 DTRCEFPDKR DAVRVIAERW KLAVYVAGRE PKRFVVVHVT PKSRAPARVL GVKGTTTVNA 600 PLPPAFDPLV DMDPRLVVSF LDLPREADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA 660 ATAMRRLDHG TVYQGAVVVI VPNVGASAAS SATNAWGGSG TMKGGGSLAA LKGGNPWKKD 720 VQETGWKDSW GDEEWATGSA NVHLPIQKKD SLISTSVNPW SVLNQESSSS SSAAAVKADV 780 SKEHSDSSAV TNLEPHDGGS NLGQHAGNLD TLEDSEVVDD WEKACE*

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MVRRSAPIWS CSSCFSIFHL NCIKKWARAP TSVDVSVDKN QRFNWRCPGC QSVQLTSSKE  60
IRYVCFCGKR PDPPSDLYLL PHSCGEPCAK PLERELGGDK EVLCPHVCVL QCHPGPCPPC  120
KAFAPPRLCP CGKKNVTTRC SDRQSVLTCG QRCEKLLECG RHRCEQICHL GPCDPCEIPV  180
NASCFCSKRT ELILCGEMAL KGEIKTEGGV FSCGSTCGKK LGCGNHICIE TCHPGSCGEC  240
GLLPSHIKTC CCGKTRLKQE RQSCLDPIPT CSQVCGKTLP CGIHHCEEAC HAGDCSPCLV  300
LVSQKCRCGS TSRTVECCKT KVDAVKFTCE KPCGQKRNCG RHRCSERCCP LSNPNNVQIA  360
DWDPHFCSLP CGKKLRCGQH ACESLCHSGH CPPCLETIFT DLTCACGKTS IPPPLPCGTP  420
PPSCQLPCSV PQPCSHPASH SCHFGDCPPC SVPVAKECIG GHVILRNIPC GSKDIRCNKL  480
CGKTRQCGLH ACGRTCHLPP CDNPSTVPGT RASCGQTCGA PRRDCRHTCT APCHPSTPCP  540
DTRCEFPDKR DAVRVIAERW KLAVYVAGRE PKRFVVVHVT PKSRAPARVL GVKGTTTVNA  600
PLPPAFDPLV DMDPRLVVSF LDLPREADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA  660
ATAMRRLDHG TVYQGAVVVI VPNVGASAAS SATNAWGGSG TMKGGGSLAA LKGGNPWKKD  720
VQETGWKDSW GDEEWATGSA NVHLPIQKKD SLISTSVNPW SVLNQESSSS SSAAAVKADV  780
SKEHSDSSAV TNLEPHDGGS NLGQHAGNLD TLEDSEVVDD WEKACE*

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g00240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425200.1	0.0	PREDICTED: NF-X1-type zinc finger protein NFXL1
Swissprot	Q9SY59	0.0	NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBL	A0A0L9UKT0	0.0	A0A0L9UKT0_PHAAN; Uncharacterized protein
STRING	XP_007160557.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6972	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X-like 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]