PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 644aa MW: 70839.6 Da PI: 6.1518 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.8 | 1.9e-08 | 10 | 32 | 34 | 56 |
HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRakek 56 +++lgL rq+k+WFqNrR+++k Vang10g00140.1 10 SQELGLAPRQIKFWFQNRRTQMK 32 689*****************998 PP | |||||||
2 | START | 181.3 | 5.5e-57 | 181 | 403 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 e+a a++el+++++ +ep+W ks + +n+d + ++f++ ++ + ea+r+s+vv m++ lv ++d + +W e ++ a+t Vang10g00140.1 181 EIASNAMEELLRLVQTNEPLWLKSNvdgrDVLNSDSYDRIFPKPNSrpktpnLRLEASRDSAVVLMNSLALVDMFMDPN-KWMELFPtivsVATT 274 57889************************9***********998889********************************.***99999999**** PP EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 ++vissg g lqlm+aelq+lsplv+ R+f+f+Ry++q ++g+w++vdvS d +q+ + R++++pSg+li+++++ghsk+twvehv+ Vang10g00140.1 275 IQVISSGmmgGSLQLMYAELQVLSPLVSsREFYFLRYCQQIEKGTWAVVDVSYDFPQDSH-FGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVEI 368 **********************************************************99.78999***************************** PP -SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgr.lphwllrslvksglaegaktwvatlqrqcek 206 +++ lph l+r l+ sg+a+ga +w+atlqr ce+ Vang10g00140.1 369 EDKtLPHRLYRNLIYSGMAFGAERWLATLQRMCER 403 876267***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 2.30E-6 | 10 | 35 | No hit | No description |
Pfam | PF00046 | 8.2E-6 | 10 | 32 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.56 | 10 | 34 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-6 | 11 | 37 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-8 | 11 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 52.537 | 172 | 406 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.83E-39 | 173 | 404 | No hit | No description |
CDD | cd08875 | 7.51E-121 | 176 | 402 | No hit | No description |
SMART | SM00234 | 4.3E-47 | 181 | 403 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-48 | 182 | 403 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-10 | 183 | 386 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.6E-15 | 426 | 623 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MEYGSGGGGS QELGLAPRQI KFWFQNRRTQ MKAQHERADN CTLRADNDKI RCENIAIREA 60 LKNVICPSCG GPPLNDDSYF DDQKLRLENA HLKEELDRVS SIAAKYIGRP ISQLPPVQPI 120 HLSSLDLSMS CFGNQAMVDH VLAPSPSLNL DLLSAGTSSS VPNFPYQPPY LSDMDKSLMS 180 EIASNAMEEL LRLVQTNEPL WLKSNVDGRD VLNSDSYDRI FPKPNSRPKT PNLRLEASRD 240 SAVVLMNSLA LVDMFMDPNK WMELFPTIVS VATTIQVISS GMMGGSLQLM YAELQVLSPL 300 VSSREFYFLR YCQQIEKGTW AVVDVSYDFP QDSHFGPHFR SRRRPSGCLI QDMPDGHSKI 360 TWVEHVEIED KTLPHRLYRN LIYSGMAFGA ERWLATLQRM CERLTYLMIT SDSTVDNPGG 420 VISSAEGKRS MMKLAQRMVT NFCGSIGTAS GRRWTTISGL NEILIRVTVH KSSNPGQPNG 480 VVLSAATTIW LPTPPHTVFN FFKDETKRPQ WDVLSNGNAV QEVAQITNGQ NADSSGSLVV 540 YCPVDLPSIN IAMSGEDTSC IPLLPNGFII LPDGETEQEG DGASTSSNAN RNKARSGGSL 600 VTVAFQILVS SSPSAKLNME VTTVCNLIGS TVQQIKASLS CPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424660.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A1S3UQX0 | 0.0 | A0A1S3UQX0_VIGRR; homeobox-leucine zipper protein HDG11 isoform X2 | ||||
STRING | XP_007160572.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |