PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g00080.1 | ||||||||
Common Name | LR48_Vigan05g096300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 347aa MW: 38850.2 Da PI: 9.5992 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.3e-06 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F r nL+ H r+H Vang10g00080.1 66 FVCEICNQGFQRDQNLQMHRRRH 88 89********************9 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.6e-05 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Vang10g00080.1 143 WVCERCSKGYAVQSDYKAHLKTC 165 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0095 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.66E-5 | 66 | 88 | No hit | No description |
PROSITE profile | PS50157 | 10.783 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 68 | 148 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.5E-4 | 134 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 100 | 143 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MASLVRIDTL LKTSSPSSLP TSQPFSFAQN ATTPTNKRKR RPAGTPDPDA EVVSLSPKTL 60 LESDRFVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRETP LVKKRVFVCP EPTCLHHDPC 120 HALGDLVGIK KHFRRKHSSH KQWVCERCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDA CNVGRLRSET QAVQAAACLS RTASSPSSEN NFSTGTGNKR EGNPSAQLQL 240 SIGSLEKGCM REKSLGGRFE DEAREQLRIA VAEKAYAEEA RKQAKRQMEQ AELEFTNAKR 300 IRQQALAELD KACALKDHAI KQIHSTMLQI TCLACKHHFQ SPTCSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 141 | 193 | 5 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 141 | 193 | 5 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g00080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424320.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | Q9C9X7 | 1e-135 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A0L9ULC2 | 0.0 | A0A0L9ULC2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QWD8 | 0.0 | A0A0S3QWD8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160566.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1769 | 32 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-127 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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