PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1037s00010.1
Common NameLR48_Vigan10g229400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 469aa    MW: 51448.4 Da    PI: 8.0719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1037s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.59e-26142208159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE.......EEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk.......versaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt +  Cpv+k+       v+r+a+d +++++tYeg Hnh+
  Vang1037s00010.1 142 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpLCPVRKQvrlslwlVQRCAQDMSILITTYEGIHNHP 208
                       58**************************998******9444444459*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-28128210IPR003657WRKY domain
SuperFamilySSF1182905.49E-23135210IPR003657WRKY domain
PROSITE profilePS5081124.179137210IPR003657WRKY domain
SMARTSM007743.2E-31142209IPR003657WRKY domain
PfamPF031066.5E-24143208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLKLLDILQQ EKTEDWANAK GVTSREESEE SELVSLSLGI SLKGKTKGER KHCKREDEGM  60
DKGLRLGLDI NLDPVDHAEA ANISSTASSF GEGGKEEEPS EMWPPSKVLK AMKYVDKSEA  120
SQNDQPKKTR VSIRARCDTQ TMNDGCQWRK YGQKMAKGNP CPRAYYRCTV SPLCPVRKQV  180
RLSLWLVQRC AQDMSILITT YEGIHNHPLP ISATAMACTT SAAASMLQSP SLSSQNGHGL  240
VNSAISSITN FSAPNYNLDN ALNFSTYHVS RPHQFYFPNS SISSLNSHPT ITLDLTAPPT  300
SSNLNFSSGF SPLQSSMSPS PWSSYSSYFN SGPLTHKRNH GDYLLNTGHQ NQPYLEHLHH  360
PICTSNNNFS QRSLPDSIIA ATKAITSNPK FQSVLATALT TYVGNEAGGX RLRENHVLEN  420
AELNLKLCSE NTIGCASSRY LNVSSSALNP QQGNSSIFPL PSLPEQWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18129210174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1037s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438420.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A0L9VNC20.0A0A0L9VNC2_PHAAN; Uncharacterized protein
STRINGXP_007157685.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-45WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]