PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g08500.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 882aa MW: 100186 Da PI: 7.4587

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g08500.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.7	7.1e-47	39	160	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + k rwl+++ei+aiL n++ +++++++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++nptf rr Vang09g08500.1 39 EAKGRWLRPNEIHAILCNHKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRR 133 4489***************************************************************************************** PP CG-1 98 cywlLee.......elekivlvhylev 117 cywlL++ +le+ivlvhy+e+ Vang09g08500.1 134 CYWLLDKyvlldfrNLEHIVLVHYRET 160 *974444333579*****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	71.059	33	166	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-68	37	161	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.1E-42	39	159	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.1E-5	320	420	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.2E-16	331	418	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	3.11E-17	508	629	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.8E-7	509	596	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.12E-14	516	626	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.1E-15	521	630	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.539	534	599	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.007	567	599	IPR002110	Ankyrin repeat
SMART	SM00248	3.3E-5	567	596	IPR002110	Ankyrin repeat
SMART	SM00248	4100	606	637	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.06E-5	697	778	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	55	730	752	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.547	731	760	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.0E-4	753	775	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.127	754	778	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.6E-4	755	775	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.06E-5	830	857	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	830	852	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	832	860	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
LHLVCLFLMA HDLTGQLVGS EIHGFHTLQD LDVSNTMEEA KGRWLRPNEI HAILCNHKYF 60 KIKAKPVHLP ESGTIVLFDR KMLRNFRKDG HNWKKKSDGK TVKEAHEHLK VGNEERIHVY 120 YAHGQDNPTF VRRCYWLLDK YVLLDFRNLE HIVLVHYRET REIQLQSSPV TPVNSNSSSV 180 SDPAASWVLA EDLDSGAKSA FSAELNDNLT VKSYEEKLHE INTLEWDDLV VSNVNTSTTS 240 NGGNVLHSYQ QNQSLLSGSF DNQVSGTPSA EVPSLGLQSQ DSFGTWMNIM SDAPCSIDES 300 ALATSISTVR EPYLSLVADN QLSSLPEQVF NLTEVSPAWA SSTEKTKVLI TGYFHSDYQH 360 LAKFNLVCVC GDVSFPVEIV QVGVYRCWVP PHSPGLVNIY LSFDGHKPIS HVVNFEYRTP 420 ILHDPTASME EKYNWNEFRL QMRLAHLLFS TDKILDIFSN TVSPNALKEA SRFSIKTSFI 480 SKSWQFLMKS IDEQTTPFPQ VKDSLFEIAL KNKLKEWLLE RIVVGSKSTE YDAQGQGVLH 540 LCAMLGYSWA ISLFSWSGLS LDFRDKFGWT ALHWAAYYGM EKMVATLLSA GARPNLVTDP 600 TPKNPGGCTA ADLAYTKGYD GLAAYLSEKS LVEQFNDMSL AGNISGTLDT SSTDVVNTQE 660 LTEDQLYLKE TLAAYRTAAG AAARIQAAYK EHELNLRYKA VELNTPEHQA RRIVAAMKIQ 720 HAFRKYETKK SNAAAVRIQH RFRTRKIRRE FLNMRRQAIK IQAAFRGFQV RRQYKKIIWS 780 VGVLEKAILR WRLKRKGFRG LQVNSAEDGE QEDGVEEEFF RTGLKQAEER VERSVVRVQA 840 MFRSKKAQEE YRRMKLAYSQ AKMDLEFEDF LTSEVDMLTD I*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

LHLVCLFLMA HDLTGQLVGS EIHGFHTLQD LDVSNTMEEA KGRWLRPNEI HAILCNHKYF  60
KIKAKPVHLP ESGTIVLFDR KMLRNFRKDG HNWKKKSDGK TVKEAHEHLK VGNEERIHVY  120
YAHGQDNPTF VRRCYWLLDK YVLLDFRNLE HIVLVHYRET REIQLQSSPV TPVNSNSSSV  180
SDPAASWVLA EDLDSGAKSA FSAELNDNLT VKSYEEKLHE INTLEWDDLV VSNVNTSTTS  240
NGGNVLHSYQ QNQSLLSGSF DNQVSGTPSA EVPSLGLQSQ DSFGTWMNIM SDAPCSIDES  300
ALATSISTVR EPYLSLVADN QLSSLPEQVF NLTEVSPAWA SSTEKTKVLI TGYFHSDYQH  360
LAKFNLVCVC GDVSFPVEIV QVGVYRCWVP PHSPGLVNIY LSFDGHKPIS HVVNFEYRTP  420
ILHDPTASME EKYNWNEFRL QMRLAHLLFS TDKILDIFSN TVSPNALKEA SRFSIKTSFI  480
SKSWQFLMKS IDEQTTPFPQ VKDSLFEIAL KNKLKEWLLE RIVVGSKSTE YDAQGQGVLH  540
LCAMLGYSWA ISLFSWSGLS LDFRDKFGWT ALHWAAYYGM EKMVATLLSA GARPNLVTDP  600
TPKNPGGCTA ADLAYTKGYD GLAAYLSEKS LVEQFNDMSL AGNISGTLDT SSTDVVNTQE  660
LTEDQLYLKE TLAAYRTAAG AAARIQAAYK EHELNLRYKA VELNTPEHQA RRIVAAMKIQ  720
HAFRKYETKK SNAAAVRIQH RFRTRKIRRE FLNMRRQAIK IQAAFRGFQV RRQYKKIIWS  780
VGVLEKAILR WRLKRKGFRG LQVNSAEDGE QEDGVEEEFF RTGLKQAEER VERSVVRVQA  840
MFRSKKAQEE YRRMKLAYSQ AKMDLEFEDF LTSEVDMLTD I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g08500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409860.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0S3RIE6	0.0	A0A0S3RIE6_PHAAN; Uncharacterized protein
STRING	XP_007138978.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]