PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g08310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28351.7 Da PI: 6.6856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 107 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++aa+k+++g Vang09g08310.1 107 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFPTAEEAARAYDAAAKRIRG 156 69*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.81E-23 | 107 | 166 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-14 | 107 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-38 | 107 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.579 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-33 | 107 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.22E-21 | 108 | 166 | No hit | No description |
PRINTS | PR00367 | 7.9E-12 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-12 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MASSVIIAHF EGAAPSPSKP TNFRHVTTPQ SPPSDHHTPF YDSVAAEQLW SELDPFSDLL 60 GFDITTTTTS KRQPPFPVIS DKKVESCAKK KKSVDAGKKS ERARKNVYRG IRQRPWGKWA 120 AEIRDPHKGV RVWLGTFPTA EEAARAYDAA AKRIRGDKAK LNFPDDTPPP SKKRCLSPDL 180 PQQSSSSSTA PPPSTVSYSG DSSGGEELDL KQLELFLGLE NEQPLPNNGE EWDNGYVMDD 240 LWMLDDVVVA NRNLVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 108 | 164 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g08310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409733.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 9e-46 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0L9TGE0 | 1e-154 | A0A0L9TGE0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RII9 | 1e-154 | A0A0S3RII9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138947.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-30 | ethylene-responsive element binding protein |