PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g07070.1 | ||||||||
Common Name | LR48_Vigan04g006400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 124aa MW: 13899.1 Da PI: 4.9353 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 7e-05 | 2 | 18 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i + A++YI++L+ Vang09g07070.1 2 DKASIIKDAIDYIQHLH 18 8**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-5 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.613 | 1 | 17 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-7 | 1 | 33 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MDKASIIKDA IDYIQHLHEQ EKIIQAEIMN LESGMPNKSS SSYDFEQEQL PVVLSKRTDT 60 MVKLCEVFES LKLKIITANI TSFSGRLLKT VFIEANGEDK YHLEIKIQTA IAALNEPLSP 120 MSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g07070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 5e-86 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419916.1 | 2e-76 | PREDICTED: transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 3e-32 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0L9UAY2 | 5e-75 | A0A0L9UAY2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RHT3 | 5e-75 | A0A0S3RHT3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138769.1 | 4e-65 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-34 | bHLH family protein |
Publications ? help Back to Top | |||
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