PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g04270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20566.9 Da PI: 10.7721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + g Vang09g04270.1 52 KFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMSG 101 89******9.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-33 | 51 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 52 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-40 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 52 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 52 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.76E-34 | 52 | 109 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
FKFSKRKRFS LNSPASSYFS LPLYLLITLN PKSLTSIFSI IIIIVVMVQT RKFRGVRQRH 60 WGSWVSEIRH PLLKRRVWLG TFETAEEAAR AYDQAAILMS GRNAKTNFPM LQTPEGDPKT 120 LTATHETPST SKELEEILHA KLRKCGKLPS PSMTCLRLDP ENSHIGVWQK RAGHCSDSNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 46 | 109 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g04270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-180 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421421.1 | 1e-97 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 3e-59 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0S3RGH7 | 1e-131 | A0A0S3RGH7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138300.1 | 2e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-51 | ERF family protein |