PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g03860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 300aa MW: 33403.5 Da PI: 6.9969 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 53.5 | 5.2e-17 | 206 | 237 | 25 | 56 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Vang09g03860.1 206 KVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 237 68****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-15 | 205 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-7 | 205 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-14 | 206 | 237 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MASQAELSME YKPYTYSTLL KSFADQTDQT YKLEDFLSRL EEERLKIDAF KRELPLCMQL 60 LTNAVDASRQ QLQNFRSNQG TRPILEEFIP IKHPNSQEST EKASNISDKA SWMTSAQLWS 120 QASEGTKPKS TITSPKESAD TGFSVSPRLA LEHRNGGAFL PFSKERNSCQ GIGDLPELGL 180 ACSESEMEVK KCEETEKCSK RENSGKVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR 240 PSPSLHAGAP TPQLVVLGGI WVPPEYATAA AHSDGTSFYS PHPTSHVPPQ HYCDSNTLR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g03860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027942696.1 | 1e-176 | myb family transcription factor EFM-like | ||||
Swissprot | Q9ZQ85 | 6e-83 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A4D6NNF6 | 1e-174 | A0A4D6NNF6_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | XP_007138330.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-85 | G2-like family protein |
Publications ? help Back to Top | |||
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