PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g03680.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 136aa    MW: 15146.1 Da    PI: 4.4745
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g03680.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.34.2e-1426733986
           NF-YB 39 vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                      efi +v+se+++ c++e+r+ti+++ +l al+ lGf dy+e++ + 
  Vang09g03680.2 26 PKEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAA 73
                    57*****************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.1E-82758IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.3E-2327119IPR009072Histone-fold
SuperFamilySSF471132.1E-2127122IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
LTLPPLFIRM EPMDIVGKAK EDASLPKEFI NLVSSESNEV CNKEERRTIA PEHVLKALGV  60
LGFGDYIEEV YAAYEQHKLE TMQDSLKGAK WSNRAEMTEE EALAEQQRMF AEARARMNGG  120
AITSKQPDAD QSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-202811448133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g03680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8699481e-154JX869948.1 Phaseolus vulgaris TATA-binding protein-associated phosphoprotein Dr1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494002.12e-82protein Dr1 homolog
RefseqXP_017422009.12e-82PREDICTED: protein Dr1 homolog
SwissprotP495922e-59NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0L9UB345e-81A0A0L9UB34_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TJR55e-81A0A1S3TJR5_VIGRR; protein Dr1 homolog
STRINGXP_007138352.12e-80(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.36e-64nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]