PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g03680.1 | ||||||||
Common Name | LR48_Vigan04g033300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 166aa MW: 18501.1 Da PI: 4.4909 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 80.2 | 2.8e-25 | 20 | 103 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf dy+e++ + Vang09g03680.1 20 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAA 103 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-39 | 17 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.69E-36 | 21 | 152 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-22 | 23 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
LTLPPLFIRM EPMDIVGKAK EDASLPKATM TKIIKEMLPP DVRVARDAQD LLIECCVEFI 60 NLVSSESNEV CNKEERRTIA PEHVLKALGV LGFGDYIEEV YAAYEQHKLE TMQDSLKGAK 120 WSNRAEMTEE EALAEQQRMF AEARARMNGG AITSKQPDAD QSLES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-35 | 21 | 144 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g03680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX869948 | 0.0 | JX869948.1 Phaseolus vulgaris TATA-binding protein-associated phosphoprotein Dr1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494002.1 | 1e-113 | protein Dr1 homolog | ||||
Refseq | XP_017422009.1 | 1e-113 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 9e-90 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0L9UB34 | 1e-111 | A0A0L9UB34_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3TJR5 | 1e-111 | A0A1S3TJR5_VIGRR; protein Dr1 homolog | ||||
STRING | XP_007138352.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 4e-92 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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