PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g03200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 267aa MW: 30143 Da PI: 5.1889 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.9e-12 | 45 | 100 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkle 54 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++ Vang09g03200.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYW 100 57*******************99998898888888*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-15 | 45 | 129 | No hit | No description |
Pfam | PF00847 | 9.9E-8 | 45 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-11 | 45 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.843 | 46 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-8 | 46 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-12 | 46 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-6 | 99 | 129 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-6 | 101 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 109 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGKQQRQKIN ATTKDKNLNS TNTVTTKVKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW ATQEEAATAY DMAAIEYRGL 120 NAVTNFDLSR YIKWLKPNNN DNTANSNVLD ANPNSETNFT PNSDQQQGFN FFQSQESTVT 180 QPRSSGATSA LGLLLQSSKF KEMMEMTSAA DLSTAASESE LVPCTFPDDI QTYFECEDSN 240 RYGEGDDNMF GELNGFVPHM FHCDDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g03200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421264.1 | 1e-114 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0L9UBG1 | 1e-112 | A0A0L9UBG1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138410.1 | 1e-96 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 4e-23 | ARIA-interacting double AP2 domain protein |