PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g03190.1 | ||||||||
Common Name | LR48_Vigan05g159400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9261.34 Da PI: 9.1662 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.3e-11 | 34 | 75 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E+ l+++ k+ G++ W++Ia +++ gRt+ ++ +w Vang09g03190.1 34 VEFSEDEETLIIRMYKLVGKR-WSLIAGRIP-GRTADEIEKYWT 75 679******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.276 | 28 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-10 | 32 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.94E-10 | 33 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-10 | 34 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.11E-8 | 35 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 35 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MADSNTSSTQ TSSHSSVKDD KICLDSGKRG SSKVEFSEDE ETLIIRMYKL VGKRWSLIAG 60 RIPGRTADEI EKYWTSRLSS SSK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g03190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238114 | 1e-76 | KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592819.1 | 3e-36 | MYB-like transcription factor ETC1 | ||||
Refseq | XP_028193891.1 | 3e-36 | MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 2e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0L9UN91 | 5e-52 | A0A0L9UN91_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G32130.3 | 1e-35 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 4e-18 | MYB_related family protein |