PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g03030.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 365aa MW: 40282.9 Da PI: 8.6354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g03030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	205	260	4	54
HHHHHHHHHHHHHHHHH.HHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsaf.eeLrellPkas....kapskKlsKaeiLekAveYIksL 54 a+ rE+ RRd++N++ +Lr + ++s ++ +K +K++iL A + + +L Vang09g03030.1 205 AKACREKMRRDKLNDRHaITLRLMFLELSsilePGRPPKTDKVAILSDAARVVVQL 260 5778*********98445666666655688777999*******999876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.22E-8	193	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9	201	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.24E-5	205	265	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-9	207	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.5.170	8.6E-4	275	307	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MLVVFGMGLR RRRHHNVPIG LAFIPSRTTF PNPNFNSPTP PSPIQYLYTP PTNPVSNPTP 60 SPPFDNKPYS PPPPPPEETA PANPPMDQVA RPGQLGQSEK TRLDLHSLSS DTVHSFSLFL 120 LASNMDMNSS SGASGWLYDY GFDIPVAGAD FMVAADSGGF SWGPQNHTLK GPSHTSLEME 180 YSLDSTVLEN SPSKRLKTES CASGAKACRE KMRRDKLNDR HAITLRLMFL ELSSILEPGR 240 PPKTDKVAIL SDAARVVVQL RNETERLKEM NDELQGKVKE LKAEKNELRD EKNMLKEEKE 300 KLEQQVKLTN IQNSFLPQGP AAKGQVGTHK LIPFIGYPGI AMWQFMPPAA VDTSKDHLLR 360 PPVA*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MLVVFGMGLR RRRHHNVPIG LAFIPSRTTF PNPNFNSPTP PSPIQYLYTP PTNPVSNPTP  60
SPPFDNKPYS PPPPPPEETA PANPPMDQVA RPGQLGQSEK TRLDLHSLSS DTVHSFSLFL  120
LASNMDMNSS SGASGWLYDY GFDIPVAGAD FMVAADSGGF SWGPQNHTLK GPSHTSLEME  180
YSLDSTVLEN SPSKRLKTES CASGAKACRE KMRRDKLNDR HAITLRLMFL ELSSILEPGR  240
PPKTDKVAIL SDAARVVVQL RNETERLKEM NDELQGKVKE LKAEKNELRD EKNMLKEEKE  300
KLEQQVKLTN IQNSFLPQGP AAKGQVGTHK LIPFIGYPGI AMWQFMPPAA VDTSKDHLLR  360
PPVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269\|PubMed:17028341}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g03030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097126	1e-155	BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424470.1	1e-168	PREDICTED: transcription factor ILR3-like
Swissprot	Q9FH37	1e-65	ILR3_ARATH; Transcription factor ILR3
TrEMBL	A0A4D6N753	0.0	A0A4D6N753_VIGUN; Myc-type
STRING	XP_007149945.1	1e-153	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14916	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-59	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Aparicio F,Pallás V The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response. Mol. Plant Pathol., 2017. 18(2): p. 173-186 [PMID:26929142] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Samira R, et al. The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis. Plant Mol. Biol., 2018. 97(4-5): p. 297-309 [PMID:29882068]